PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495804.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 182aa    MW: 21275.5 Da    PI: 8.8351
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495804.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.27.2e-14831621480
                     T-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
              B3  14 grlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                     +rl +p +f +e              + +k++s++++++d++g+  ++k++ +++ +r+vl kGW++ v+an+L+ gD+v
  XP_016495804.1  83 SRLLIPGTFDKELlknlseeerikleNDDKNKSFEVKVMDQDGNFHKMKFTRWQSLKRFVLNKGWNNLVEANNLQKGDTV 162
                     6788888888777888888888888877788************999999999**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.29270182IPR003340B3 DNA binding domain
SMARTSM010190.006573177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.4E-1674176IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-1776175IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-1183162IPR003340B3 DNA binding domain
CDDcd100178.27E-1591177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MTRIKLFGKE IEVEEKPKTI KLFGTRIYPC NVKHEQEQEQ EAALQENLPP TNMCQAIRLA  60
GGSRLVYIGR KKAEDSDINP DLSRLLIPGT FDKELLKNLS EEERIKLEND DKNKSFEVKV  120
MDQDGNFHKM KFTRWQSLKR FVLNKGWNNL VEANNLQKGD TVDLWHFRID LKLCFAINII  180
KN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774698.11e-133PREDICTED: putative B3 domain-containing protein At3g49610
RefseqXP_016495804.11e-133PREDICTED: putative B3 domain-containing protein At3g49610
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA116791115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.16e-10B3 family protein